產品介紹核酸定序Revio™ 高精準長讀取定序系統 (Revio™ Long-Read Sequencing System)

Revio™ 高精準長讀取定序系統

Revio™ 高精準長讀取定序系統

PacBio Revio™ 高精準長讀取定序系統,專為大規模 HiFi 定序需求而設計。搭配最新 SPRQ-Nx chemistry,進一步提升定序通量、降低樣本需求與定序成本,讓高精準長讀取定序更適合大規模人類全基因體與多元研究應用。

更多詳細資訊歡迎洽詢 PacBio 台灣代理伯森生技。

Revio 系統與其他定序技術平台比較表

  Revio (HiFi sequencing) SBS sequencing Nanopore sequencing
Read length 15–20 kb5 2x150 bp 10–100 kb
Read accuracy 99.95% (Q33)1 99.92% (Q31)3 98.90% (Q19)4
Run time 24 hours2 44 hours 72 hours
Yield 120-480 Gb2 2,400–3,000 Gb 50–110 Gb
Coverage Unbiased Reduced at low and high (GC) Reduced in low-complexity runs
Genome completeness6 ✓ X ✓
Variant calling — SNVs, Indels, SVs5 ✓ X X
Areas of high homology ✓ X X
Phasing ✓ X ✓
Methylation Every run Via library prep Every run
  1. Read accuracy PacBio HiFi: precisionFDA Truth Challenge V2
  2. HiFi yield specification based on HG002/GM24385 human DNA extracted with Nanobind CBB kit and prepared with SMRTbell prep kit 3.0. Run time specification is for the sequencing reaction. HiFi yield is dependent on library fragment size. Yield is typically lower for shorter libraries.
  3. Illumina: HG002 2×150 bp NovaSeq library, precisionFDA Truth Challenge V2
  4. ONT: Q20+ chemistry (R10.4, Kit 12), Oct 2021 GM24385 Q20+ Simplex dataset release
  5. Shafin Nat Methods 2021 ( https://doi.org/10.1038/s41592-021-01299-w )
  6. Cheng 2021 Nat Methods ( https://doi.org/10.1038/s41592-020-01056-5 ) and Shafin 2020 Nat Biotech ( https://doi.org/10.1038/s41587-020-0503-6 )

產品規格

System specifications with SPRQ-Nx chemistry

Library Run timea Q30+ bases HiFi yield
per SMRT Cellb
Methylation
0.5-5 kbd 12 hours 95% 6-8 million reads 5mC and 5hmC at CpG sites and 6mA for native DNAc
5-10 kb 24 hours 90% 35-70 Gb
10-15 kb 70-100 Gb
15-20 kb 100-120 Gb
20-25 kb 30 hours 85% 100-120 Gb
  1. Run time refers to the data collection step, which determines the time between processing SMRT Cells.
  2. HiFi yield is dependent on library quality and sequencing preparation procedures. Specified yield is based on high-quality samples prepared following best practices.
  3. The Revio 6mA caller is designed to detect methylation in the context of the Fiber-seq chromatin assay.
  4. Libraries 0.5-5kb are supported only with single acquisition Revio SMRT Cells with either SPRQ or SPRQ-Nx chemistry.

Key applications and sample throughput with SPRQ-Nx chemistry

Library Application Per Revio SMRT Cell Per yeara Expected coverageb
0.5-5 kbc Amplicon sequencing > 1,000 > 2.5 million 50x
5-10 kb Microbial genome 384 480,000 30x
5-15 kb PureTarget panels 96 96,000 >100x mean per target
5-10 kb Ampli-Fi human genome 1 1,250 20x
15-20 kb Human genome 2 2,500 20x
15-20 kb Human methylation profiling 8 10,400 5x
15-20 kb Transcriptome with Kinnex full-length RNA kit 6 7,500 10 million reads
  1. Annual throughput is based on 2,500 Revio SMRT Cells for 12 hour runs; 1,250 for 24 hour runs. Adaptive loading – which increases the consistency of yield per SMRT Cell – adds about 4 hours to run time, affecting the maximum number of SMRT Cells per year.
  2. Expected coverages are estimates.
  3. 0.5-5kb amplicon sequencing performance with SPRQ-Nx chemistry based on single-use SMRT Cells
Instrument specifications
Operating environment
  • Temperature: 19–25°C
  • Humidity: 20–80% relative humidity, non-condensing
  • Ventilation: 13,000 BTU/hr (3,800 W)
Dimensions
  • W × D × H: 92.7 cm × 91.4 cm × 174.5 cm
  • Weight: 465 kg
  • Floor space: 243.8 cm × 138.5 cm
Electrical power 200–240 VAC at 50-60 Hz, max 5 kVA/4.8 kW/24A
Compute
  • Network connection: 1 GbE or 10 GbE, copper
  • Output file format: hifi_reads.bam, ≈60 GB each, up to 78 TB per year
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