Revio™ 高精準長讀取定序系統
PacBio Revio™ 高精準長讀取定序系統,專為大規模 HiFi 定序需求而設計。搭配最新
SPRQ-Nx chemistry,進一步提升定序通量、降低樣本需求與定序成本,讓高精準長讀取定序更適合大規模人類全基因體與多元研究應用。
- 更高通量:Revio 系統可同時運行最多 4 張 SMRT Cell,搭配 SPRQ-Nx chemistry,每次運行最高可產出 480 Gb HiFi
reads,支援大規模全基因體定序需求。
- 更低樣本需求與更高使用彈性:每次 acquisition 僅需 500 ng DNA,並支援 SMRT Cell 重複使用,每張 SMRT Cell 最多可進行 3 次
acquisition,提升珍貴或有限樣本的應用彈性與耗材使用效率。
- 豐富的基因體資訊:HiFi reads 兼具長讀長與高準確度,可分析 SNV、INDEL、結構變異、重複序列與 haplotype phasing,並可於定序資料中偵測
5mC、5hmC 與 6mA DNA 修飾資訊。
- 快速靈活:支援多種定序時間,開始定序後即可使用工作載台安排下次上機,可依樣本與研究需求彈性安排定序流程,並透過自動化 loading、SMRT Cell washing
與機上資料分析功能,簡化日常操作。
更多詳細資訊歡迎洽詢 PacBio 台灣代理伯森生技。
Revio 系統與其他定序技術平台比較表
| |
Revio (HiFi sequencing) |
SBS sequencing |
Nanopore sequencing |
| Read length |
15–20 kb5 |
2x150 bp |
10–100 kb |
| Read accuracy |
99.95% (Q33)1 |
99.92% (Q31)3 |
98.90% (Q19)4 |
| Run time |
24 hours2 |
44 hours |
72 hours |
| Yield |
120-480 Gb2 |
2,400–3,000 Gb |
50–110 Gb |
| Coverage |
Unbiased |
Reduced at low and high (GC) |
Reduced in low-complexity runs |
| Genome completeness6 |
✓ |
X |
✓ |
| Variant calling — SNVs, Indels, SVs5 |
✓ |
X |
X |
| Areas of high homology |
✓ |
X |
X |
| Phasing |
✓ |
X |
✓ |
| Methylation |
Every run |
Via library prep |
Every run |
- Read accuracy PacBio HiFi: precisionFDA Truth Challenge V2
- HiFi yield specification based on HG002/GM24385 human DNA extracted with Nanobind CBB kit and
prepared with SMRTbell prep kit 3.0. Run time specification is for the sequencing reaction. HiFi yield is
dependent on library fragment size. Yield is typically lower for shorter libraries.
- Illumina: HG002 2×150 bp NovaSeq library, precisionFDA Truth Challenge V2
- ONT: Q20+ chemistry (R10.4, Kit 12), Oct 2021 GM24385 Q20+ Simplex dataset release
- Shafin Nat Methods 2021 ( https://doi.org/10.1038/s41592-021-01299-w )
- Cheng 2021 Nat Methods ( https://doi.org/10.1038/s41592-020-01056-5 ) and Shafin 2020 Nat Biotech ( https://doi.org/10.1038/s41587-020-0503-6 )
產品規格
System specifications with SPRQ-Nx chemistry
| Library |
Run timea |
Q30+ bases |
HiFi yield per SMRT Cellb |
Methylation |
| 0.5-5 kbd |
12 hours |
95% |
6-8 million reads |
5mC and 5hmC at CpG sites and 6mA for native DNAc
|
| 5-10 kb |
24 hours |
90% |
35-70 Gb |
| 10-15 kb |
70-100 Gb |
| 15-20 kb |
100-120 Gb |
| 20-25 kb |
30 hours |
85% |
100-120 Gb |
- Run time refers to the data collection step, which determines the time between processing SMRT Cells.
- HiFi yield is dependent on library quality and sequencing preparation procedures. Specified yield is based on high-quality samples prepared following best practices.
- The Revio 6mA caller is designed to detect methylation in the context of the Fiber-seq chromatin assay.
- Libraries 0.5-5kb are supported only with single acquisition Revio SMRT Cells with either SPRQ or SPRQ-Nx chemistry.
Key applications and sample throughput with SPRQ-Nx chemistry
| Library |
Application |
Per Revio SMRT Cell |
Per yeara |
Expected coverageb |
| 0.5-5 kbc |
Amplicon sequencing |
> 1,000 |
> 2.5 million |
50x |
| 5-10 kb |
Microbial genome |
384 |
480,000 |
30x |
| 5-15 kb |
PureTarget panels |
96 |
96,000 |
>100x mean per target |
| 5-10 kb |
Ampli-Fi human genome |
1 |
1,250 |
20x |
| 15-20 kb |
Human genome |
2 |
2,500 |
20x |
| 15-20 kb |
Human methylation profiling |
8 |
10,400 |
5x |
| 15-20 kb |
Transcriptome with Kinnex full-length RNA kit |
6 |
7,500 |
10 million reads |
- Annual throughput is based on 2,500 Revio SMRT Cells for 12 hour runs; 1,250 for 24 hour runs. Adaptive loading – which increases the consistency of yield per SMRT Cell – adds about 4 hours to run time, affecting the maximum number of SMRT Cells per year.
- Expected coverages are estimates.
- 0.5-5kb amplicon sequencing performance with SPRQ-Nx chemistry based on single-use SMRT Cells
| Instrument specifications |
| Operating environment |
- Temperature: 19–25°C
- Humidity: 20–80% relative humidity, non-condensing
- Ventilation: 13,000 BTU/hr (3,800 W)
|
| Dimensions |
- W × D × H: 92.7 cm × 91.4 cm × 174.5 cm
- Weight: 465 kg
- Floor space: 243.8 cm × 138.5 cm
|
| Electrical power |
200–240 VAC at 50-60 Hz, max 5 kVA/4.8 kW/24A |
| Compute |
- Network connection: 1 GbE or 10 GbE, copper
- Output file format: hifi_reads.bam, ≈60 GB each, up to 78 TB per year
|